GSM6373687: Mint-ChIP-seq from memory B cell (ENCLB962YMY); Homo sapi... - SRA

SRX16500340: GSM6373687: Mint-ChIP-seq from memory B cell (ENCLB962YMY); Homo sapiens; ChIP-Seq
12 ILLUMINA (NextSeq 500) runs: 24.5M spots, 3.3G bases, 1.2Gb downloads

Submitted by: NCBI (GEO)

Study: GSE59395: Genome-wide map of regulatory interactions in the human genome

PRJNA63443 • SRP012412 • All experiments • All runs

show Abstracthide Abstract

Summary: We generated a genome-wide interaction map of regulatory elements in human cells (K562, GM12878) using Chromatin Interaction Analysis by Paired-End Tag sequencing (ChIA-PET) experiments targeting six broadly distributed factors. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODEDataReleasePolicyFinal2008.pdf Overall Design: Chromatin interactions identified by ChIA-PET for 4 different histone modifications, RAD21 and RNAPII in K562 cell line, two biological replicates each.

Sample: ENCODE biosample ENCBS880QZN

SAMN29769950 • SRS14131777 • All experiments • All runs

Organism: Homo sapiens

Library:

Instrument: NextSeq 500

Strategy: ChIP-Seq

Source: GENOMIC

Selection: ChIP

Layout: PAIRED

Construction protocol: general protocol: https://www.encodeproject.org/documents/fc792518-31dc-4829-81d3-4dc9299c91bf/@@download/attachment/Bernstein-mint-chip3-a-low-input-chip-seq-protocol-using-multiplexed-chromatin-and-T7-amplificationn.pdf general protocol: https://www.encodeproject.org/documents/59eca314-f378-4bd8-a437-49f823e217be/@@download/attachment/MINT%20ChIP%20Protocol%20-%20Bernstein%20ENCODE.pdf

Experiment attributes:

GEO Accession: GSM6373687

Links:

NCBI link: NCBI Entrez (gds)

Runs: 12 runs, 24.5M spots, 3.3G bases, 1.2Gb

Run	# of Spots	# of Bases	Size	Published
SRR20476218	1,028,153	137.8M	53Mb	2022-07-24
SRR20476219	4,254,663	570.1M	201.9Mb	2022-07-26
SRR20476220	4,201,080	562.9M	198.1Mb	2022-07-25
SRR20476221	4,184,714	560.8M	197.8Mb	2022-07-24
SRR20476222	1,048,803	140.5M	54.8Mb	2022-07-25
SRR20476223	1,037,328	139M	53.6Mb	2022-07-26
SRR20476224	1,055,952	141.5M	55.1Mb	2022-07-24
SRR20476225	863,807	115.8M	42Mb	2022-07-24
SRR20476226	869,142	116.5M	41.8Mb	2022-07-25
SRR20476227	850,283	113.9M	40.6Mb	2022-07-25
SRR20476228	876,177	117.4M	42.6Mb	2022-07-26
SRR20476229	4,273,560	572.7M	203.1Mb	2022-07-25

ID:: 23229037

SRA

Sequence Read Archive

Result Filters

Send to:

Supplemental Content

Related information

Recent activity